AT1G05120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Helicase protein with RING/U-box domain | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Helicase protein with RING/U-box domain; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G02670.1); Has 29218 Blast hits to 14448 proteins in 1607 species: Archae - 124; Bacteria - 8622; Metazoa - 6656; Fungi - 6694; Plants - 2674; Viruses - 189; Other Eukaryotes - 4259 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1471624..1476067 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 94593.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.16 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 833 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MELRSRNKAI RPSTEVVDLE EGTGINPDEE PYAISSDDDS IGSEFQGDEE EEEELEEVVA NDDLPNPVPV LAIVNLPRAS KKRKKPDARK EKVVLLWETW 101: EKEQNSWIDE HMSEDVDLDQ HNAVIAETAE PPSDLIMPLL RYQKEFLAWA TKQEQSVAGG ILADEMGMGK TIQAISLVLA RREVDRAQFG EAAGCTLVLC 201: PLVAVSQWLN EIARFTSPGS TKVLVYHGAK RAKNIKEFMN YDFVLTTYST VESEYRRNIM PSKVQCAYCS KSFYPKKLVI HLRYFCGPSA VKTAKQSKQK 301: RKKTSDSSSQ QGKEADAGED KKLKKSKKKT KQTVEKDQLG SDDKEKSLLH SVKWNRIILD EAHYIKERRS NTARAVFALE ATYRWALSGT PLQNRVGELY 401: SLIRFLQIRP YSYYFCKDCD CRILDYVAHQ SCPHCPHNAV RHFCWWNKYV AKPITVYGSF GLGKRAMILL KHKVLKDILL RRTKLGRAAD LALPPRIITL 501: RRDTLDVKEF DYYESLYKNS QAEFNTYIEA GTLMNNYAHI FDLLTRLRQA VDHPYLVVYS NSSGANANLV DENKSEQECG LCHDPAEDYV VTSCAHVFCK 601: ACLIGFSASL GKVTCPTCSK LLTVDWTTKA DTEHKASKTT LKGFRASSIL NRIKLDDFQT STKIEALREE IRFMVERDGS AKAIVFSQFT SFLDLINYTL 701: GKCGVSCVQL VGSMTMAARD TAINKFKEDP DCRVFLMSLK AGGVALNLTV ASHVFMMDPW WNPAVERQAQ DRIHRIGQYK PIRVVRFIIE NTVEERILRL 801: QKKKELVFEG TVGGSQEAIG KLTEEDMRFL FTT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)