AT1G01830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.986 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G45720.2); Has 3429 Blast hits to 2144 proteins in 215 species: Archae - 2; Bacteria - 14; Metazoa - 502; Fungi - 465; Plants - 2072; Viruses - 0; Other Eukaryotes - 374 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:298717..300441 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61927.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.01 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||||||||||
| Length | 574 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGTMAELGTM GKFGAMAEEQ QVNQMIMDKQ SVEEWLSRVN SLIPSVLSKA KTVKKFTGRW KTIISKIEQI PACLSDLSSH PCFSKNKLCN EQLQSVAKTL 101: SEVIELAEQC STDKYEGKLR MQSDLDSLSG KLDLNLRDCG VLIKTGVLGE ATLPLYISSS SETPKISSLK ELLARLQIGH LESKHNALES LLGAMQEDEK 201: MVLMPLIGRA NVAALVQLLT ATSTRIREKA VNLISVLAES GHCDEWLISE GVLPPLVRLI ESGSLETKEK AAIAIQRLSM TEENAREIAG HGGITPLIDL 301: CKTGDSVSQA ASAAALKNMS AVSELRQLLA EEGIIRVSID LLNHGILLGS REHMAECLQN LTAASDALRE AIVSEGGVPS LLAYLDGPLP QQPAVTALRN 401: LIPSVNPEIW VALNLLPRLR HVLKSGSLGA QQAAASAICR FACSPETKRL VGESGCIPEI VKLLESKSNG CREAAAQAIA GLVAEGRIRR ELKKDGKSVL 501: TNLVMLLDSN PGNTAKKYAV AGLLGMSGSE KSKKMMVSYG AIGYLKKLSE MEVMGADKLL EKLERGKLRS FFHR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)