AT1G17140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.700 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : interactor of constitutive active rops 1 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a ROP/RAC effector, designated interactor of constitutive active ROPs 1 (ICR1), that interacts with GTP-bound ROPs. ICR1 is a scaffold mediating formation of protein complexes that are required for cell polarity. ICR1 is comprised of coiled-coil domains and forms complexes with itself and the exocyst vesicle-tethering complex subunit SEC3. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
interactor of constitutive active rops 1 (ICR1); BEST Arabidopsis thaliana protein match is: ROP interactive partner 2 (TAIR:AT1G78430.1); Has 53861 Blast hits to 29615 proteins in 2229 species: Archae - 901; Bacteria - 7093; Metazoa - 25838; Fungi - 5211; Plants - 3173; Viruses - 136; Other Eukaryotes - 11509 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:5856740..5857861 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38359.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.99 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.07 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 344 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPRPRVSELS QRQAPRLRSS SSTSDSNHSN RLITTDQSFK PGVDRKSPRS GGPNSDPLGQ KKLGGRISDL ESQLGQAQEE LRLLKEQLAN AEAVKKQAQD 101: ELHKKSKKPN PLARVEESAT EAERIDRDEI PGDVQKETDV FEVPVEKIAV EEEELRSGND EAEKLVAKED EIKMLKARLY DMEKEHESLG KENESLKNQL 201: SDSASEISNV KANEDEMVSK VSRIGEELEE SRAKTAHLKE KLESMEEAKD ALEAEMKKLR VQTEQWRKAA DAAAAVLSGE FEMNGRDRSG STEKYYAGGF 301: FDPSAGFMDP PGMADDYDDG LGSGKRKSSG MKMFGELWRK KGQK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)