AT5G64830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : programmed cell death 2 C-terminal domain-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
programmed cell death 2 C-terminal domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: apoptosis; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Programmed cell death protein 2, C-terminal (InterPro:IPR007320); BEST Arabidopsis thaliana protein match is: zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein (TAIR:AT4G02220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:25914911..25916512 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42658.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.64 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||||||
| Length | 380 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVGILLGLPG KWAEDELEPS DHYTTKIGGL PDWPPIPDDA LKPELLNCCS CGSKLSLVAQ VYAPISTEIL DIQERTLYIF GCLMPKCGTS EQSWRAFSIQ 101: KAIAKEKGST KIADLPVAFP KTHRLDGDDD DDDDDDEDFD FASLAKALAE ASSAAASITK KQKSKPSGNA SSGTKAKPSP LKSETRVEDH IKLETGAVVP 201: CFYIYTKEEI PSKEVDRFSQ NYSSLSIKDK GTGNNDESES EEKWEDEKYE YDKALNADRT YLKFKKRLDA NPEQCFRYWY GGKPILATED MKSPDKCRNC 301: DSQRHFEIQL MPPLIYFLHE GVVDKGIKQS LDNWDWMTLI VYTCSKSCAN AVNGDWVVTE ECVAVQYEKP MNLDHASFFK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)