AT5G40520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; Has 3679 Blast hits to 2474 proteins in 390 species: Archae - 10; Bacteria - 571; Metazoa - 1012; Fungi - 528; Plants - 214; Viruses - 74; Other Eukaryotes - 1270 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:16231515..16233546 | ||||||||||||||||||||
| Molecular Weight (calculated) | 65607.10 Da | ||||||||||||||||||||
| IEP (calculated) | 4.84 | ||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||
| Length | 574 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MILTGGSTSF DKTRLKMKEI IRDSVRRDFG KNKEGIGKEE IINQLHQVLS DPANFREDCR MNLGRTPTLH SHRDAAMKVL NELDSLSTQT LRAMKRKLKG 101: SRMIPQLKNS RRGQRRSDLI NQVRQASEKM LSELSAGDKL QEQLAKALSV VDLSLKLSPG YKTAAATDFF RFSPETKNLQ NEIVKAVWLL RKVRFRELKR 201: LHLCLDPEAE VSNDSLRSAV RKTLIEYLFE CSDLDTIPKS LMEALSLVNS RTGNVEHKVC PREAIEEETE CILNVSAQVK QIFCQCIPNY ELDQDFGDAY 301: MEDLEDSDDN DDDDDDDDDD DENCNLFDNE KLGNKEESRC RNIKLEVKDT QDDAMESSDS DHEESGAECL VLDPTDSTHE TNQHDFSSSV NRVVVRDLPE 401: SITRVYPRSL YVTPTSNKSI VISDRHDIAM SKTRVKVERD IEMEVDNQFS SRSLFSVENI KSDDHGEQKP RRRNKNQYLA IQEISDETSL VAHNLIGRLL 501: EKFADRQRLN LETDERSYLG GESRLQEKVE VSEKKQASSQ AKSDEAIILS VVKEQITSLE ESVLMRLKEL MEVS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)