AT5G64410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : oligopeptide transporter 4 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
oligopeptide transporter | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
oligopeptide transporter 4 (OPT4); CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: oligopeptide transporter 2 (TAIR:AT1G09930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:25750921..25754974 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81797.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.85 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.43 | ||||||||||||||||||||||||||||||||||||
| Length | 729 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATADEFSDE DTSPIEEVRL TVTNTDDPTL PVWTFRMWFL GLISCSLLSF LNQFFSYRTE PLVITQITVQ VATLPIGHFL AKVLPKTRFG LPGCGSARFS 101: LNPGPFNMKE HVLISIFANA GSAFGSGSAY AVGIITIIKA FYGRSISFIA GWLLIITTQV LGYGWAGLLR KYVVEPAHMW WPSTLVQVSL FRALHEKDDQ 201: RMTRAKFFVI ALVCSFGWYI VPGYLFTTLT SISWVCWAFP RSVTAQQIGS GMRGLGLGAF TLDWTAVASF LFSPLISPFF AIANVFIGYV LLIYFVLPLA 301: YWGFDSYNAT RFPIFSSHLF TSVGNTYDIP AIVNDNFELD LAKYEQQGRI NLSMFFALTY GLGFATIAST LTHVALFYGK EISERFRVSY KGKEDIHTRL 401: MKRYKDIPSW WFYSMLAATL LISLALCVFL NDEVQMPWWG LVFASAMAFV FTLPISIITA TTNQTPGLNI ITEYAMGLIY PGRPIANVCF KVYGYMSMAQ 501: AVSFLNDFKL GHYMKIPPRS MFLVQFIGTI LAGTINITVA WWQLNSIKNI CQEELLPPNS PWTCPGDRVF FDASVIWGLV GPKRIFGSQG NYAAMNWFFL 601: GGALGPVIVW SLHKAFPKRS WIPLVNLPVL LGATAMMPPA TAVNYNSWIL VGTIFNLFVF RYRKSWWQRY NYVLSAAMDA GVAFMAVLLY FSVGMEEKSL 701: DWWGTRGEHC DLAKCPTARG VIVDGCPVK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)