AT4G23540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Domain of unknown function, NUC173 (InterPro:IPR012978); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G34357.1); Has 378 Blast hits to 366 proteins in 171 species: Archae - 0; Bacteria - 6; Metazoa - 125; Fungi - 137; Plants - 63; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:12280547..12286420 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 123484.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.42 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||
| Length | 1131 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAAFEDRADE NDEIAFKDGN TDISQQLMDR YGKSSAAQHR HLVATAVAMR SILTSESLPP SPSAFFAAAI SSVDSSTEDP VAVSALLTFL SIVVPLVPSG 0101: EISATMARDA VAVLVKPIEE EGTKLGVASL RAGVKCIGTL LIGFCDLNDW ESLQIGFALL LKFAIDKRPK VRRCAQECLE KLFGSLRSST VIKEASNTVY 0201: ALLKEYKPVL SDLSSTKIEE GSKVDSTLKS ENAEAAHVLN VLSATIPFLS AKVSSRVFSE LCGLMASQFS PLTRQILKGI DTIFKNSEDK IVVPEIEGLV 0301: TTLTSYLSLH DKNPADTIVH VTTLLKDALE KAYSVEPTLC LSKLPLVCSS LAGLLTSTDD IASKASTILK DLISSHIDKK KLLTEGSLSN QDEDNVTSGD 0401: NINAARCVCS VFESVLNSCD GIPNEHILTV INLLIEKLGE LSYILAKNII LKLADLMKNA IGDTSSSQDL QQCIGSAVVA MGPVRLLTLL PITLHAESHS 0501: CTNAWLIPIL RKYIIGASLA YYVDNIVPLA KSLMLASKGA KKSTHGKELR ACGHELLRLL PAFCNYPVDV ANKFGSLAKL MVKFIKKKSF MHEAVALSLQ 0601: MLVNQNKGMP KPSTDMGEAK AISEEDATTE LERGFHYSKK ASTKNMKALA SSSTELLQTL VDVFTVSGTE ISADFKAAIG CLASTLDSSV RKKILISLLN 0701: KFDPAGESET EGQVNQSNDS VDEEKENCSS TKTQLKRSAV LDLASSFVEG AKEDLIELIY NLVRQSFQAT DEADLYGAYD TLSRVLQEHG WFCASHFAEV 0801: IEMLLSHKTP EDAASSRSRF ACLHVLMAHG IQSSTEEENE KAFLILNEMI LTLKEGKEEH RKAACDTLVM VYTTLKNSSS ITSDELCPKL INMITGYISG 0901: TSPHIRSGAV SALSALVYKD PEICLSSPEL LSSVLSLLHT KSIEIIKAVL GFVKVLVSTS QAQDLHSLLQ NLLYEILPWS SVSRHYFKSK VTIIVEIMVR 1001: KCGTRAVQLA TPDKHKSFIE TVLENRSGKS KDKEETNESQ TTSIDPSRGP RKRNYREASS ETTAKQDGNK FKRQKRTYQQ HTPASDINQS RTGPQRPGNR 1101: SFGKQREASG NNHKSGKETR KPQKNRFRKA T |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)