AT5G50860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein kinase superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: N-terminal protein myristoylation, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G54610.3); Has 127216 Blast hits to 125539 proteins in 4407 species: Archae - 96; Bacteria - 14251; Metazoa - 47558; Fungi - 13008; Plants - 31428; Viruses - 439; Other Eukaryotes - 20436 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:20693778..20696983 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64291.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.01 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 580 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGCVLCKEST GDKRKHNNPD EPPPADLRNT EDLPSSSSTT TAAISVEIGE KKKKDLDSIQ IQPERRTWHT GDFSAGSSRR PGMSLRTPEG WPPWLIAACG 101: DSIKDLTPRR ATTYEKLEKI GQGTYSNVYK AKDLLSGKIV ALKKVRFDNL EAESVKFMAR EILVLRRLNH PNVIKLQGLV TSRVSCSLYL VFEYMEHDLS 201: GLAATQGLKF DLPQVKCFMK QLLSGLEHCH SRGVLHRDIK GSNLLIDNDG ILKIADFGLA TFYDPKQKQT MTSRVVTLWY RPPELLLGAT SYGTGVDLWS 301: AGCIMAELLA GKPVMPGRTE VEQLHKIFKL CGSPSDSYWK KYRLPNATLF KPQHPYKRCV AEAFNGFTPS SVHLVETLLT IDPADRGTST SALNSEFFTT 401: EPLPCDPSSL PKYPPSKELN VKLRDEELRR QKGLAGKGSG IDGARRIRYR GDRTGRAIPA PEANAESQAN LDRWRSISQT NGKSKSEKFP PPHQDGAVGY 501: PLEDLSKKTS VFGAKTETSF GLSRSLKSGE GTSMRKISNK DGARGASSRK YIWGLKPPPA LGLSMDLLFR SRSEVFGIRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)