AT1G06730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.941 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pfkB-like carbohydrate kinase family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: D-ribose catabolic process; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT3G59480.1); Has 14630 Blast hits to 14623 proteins in 2218 species: Archae - 286; Bacteria - 12051; Metazoa - 104; Fungi - 33; Plants - 346; Viruses - 0; Other Eukaryotes - 1810 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:2067633..2070049 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52765.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.24 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||||||||||
| Length | 488 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYHHAFSLKF HSFSPHYALS LSNFSTQSPN PLLPPFARVP HVTSSVCLRC RSSAADVSPV IYADGSSSIC SFGETGDVAV VEKPIDVSTL GNLCVDIVLS 101: VHELPPPSRG ERKALMDELS MSPPDKKYWE AGGNCNMAIA AARLGLHCVA IGHVGDEIYG EFLLDVLHEE GIGTVALNGG TNEKDTSSFC ETLICWVLVD 201: PLQRHGFCSR ADFKEEPAFS WITDLSDEVK MAIRQSKVLF CNGYDFDDFS PSFIMSTIDY AAKVGTAIFF DPGPRGKSLS KGTPDERRAL AHFLRMSDVL 301: LLTSEEVEAL TGIRNPVKAG QEILRNGKGT KWVIVKMGPK GSILVTKSSV SVAPAFKVEV VDTVGCGDSF VAAIALGYIR NMPLVNTLTI ANAVGAATAM 401: GCGAGRNVAK RHQVVDLMKA SKLNDEEKFF EQLLAENSES SRINLLSKGM IKDGRSNKQL IETISMEKVV SELLAELELG RCCVKASS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)