AT5G48460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.725 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Actin binding Calponin homology (CH) domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Actin binding Calponin homology (CH) domain-containing protein; FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actinin-type, actin-binding, conserved site (InterPro:IPR001589), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715); BEST Arabidopsis thaliana protein match is: fimbrin-like protein 2 (TAIR:AT5G35700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:19636225..19639365 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73668.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.52 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 654 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSGFVGILVS DPWLQNQFTQ VELRSLKSHF TSMKRESGKL TVSDLASRMG KSKVVGDQNL SNEERATLIQ NFHPNLNDEV DFEFYLRIYL NLQAHVNAII 101: GSGVKNSSAF LKAATTTLLH TISDSEKSSY VAHINNYLSG DEFLNKCLPI NPSSNDLFEV AKDGVLLCKL INVAVPGTID ERAINTKSML NPWERNENHT 201: LCLNSAKAIG CTVVNIGTQD IIEGRRHLVL GVISQIIKIQ LLADLNLKKT PQLVELVGDS KDVEELMSLP PEKILLRWMN FQLRKTEYKK TVTNFSSDVK 301: DAEAYTNLLN VLAPEHKNPS HLAVKSSFER AKLVLEHADK MGCRRYLTAK DIVEGSPNLN LAFVAHIFQH RNGLSTQTKQ ISFLENLADD IQISREEKAF 401: RFWINSFDGS VYINNVFEDL RDGWILLQTL DKVSPGIVNW KVSSKPPIKL PFKKVENCNQ VVKLGKQLKF SLVNIAGNDI VQGNKKLILA YLWQLMRYNI 501: LQLLKNLRLH SNGKEITDAD ILEWANAKVR NNGCKTRMYS FRDKSLSDGV FFLELLSSVQ PRSVNWSLVT NGVTDEEKKM NATYVISIAR KLGCSIFLLP 601: EDIIEVNQKM MLTLTASIMY WTLKQPLHLN KPIGSPDSHN GSLLDDSTSD SSIE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)