AT3G58100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : plasmodesmata callose-binding protein 5 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
plasmodesmata callose-binding protein 5 (PDCB5); FUNCTIONS IN: callose binding, polysaccharide binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasmodesma, anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: Carbohydrate-binding X8 domain superfamily protein (TAIR:AT1G29380.1); Has 1455 Blast hits to 1408 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 65; Plants - 1390; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:21515397..21516329 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 19171.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.77 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 180 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIMSLPQCSH LRLSILAATA AMLMVITTAQ IGGQVIQVEL WCVAKNNAED SSLQTAIEWA CGQGGADCGP IQQGGPCNDP TDVQKMASFV FNNYYLKNGE 101: EDEACNFNNN AALTSLNPSQ GTCKYPSSKG ANNGRLADDT SMGAGQADMS RGGRPISSSW MVTFIGFGSL LTMTWIIHHL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)