AT5G44390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FAD-binding Berberine family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: cotyledon, embryo, hypocotyl, root, stamen; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: FAD-linked oxidase, FAD-binding, subdomain 2 (InterPro:IPR016168), FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT5G44400.1); Has 8763 Blast hits to 8674 proteins in 1286 species: Archae - 135; Bacteria - 4861; Metazoa - 111; Fungi - 1786; Plants - 808; Viruses - 0; Other Eukaryotes - 1062 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:17882329..17884906 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61486.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.55 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||
| Length | 542 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGNSKPLPTI SCISVFALYF SFYTITLTSS TSLQDDFIKC LYRNTNVRFT LDKTFFTPER NASIFTEVLE STAQNQRYLT KTMPKPGFIF KPVHESHVQA 101: SVICSKKLEI HFRVRSGGHD YEGVSYVSQI EKPFVLIDLS KLRQINVDIK DTSAWVEAGA TVGELYYRIA EKSKFHGFPA GVYPSLGIGG HITGGAYGSL 201: MRKYGLAADN VLDAKIVDAN GKLLDRASMG EDLFWAIRGG SGGSFGIILS WKIKLVPVPE TLTVFTVTKT FEQDRSFKIL SKWQEIADNL VDELFLRVFF 301: TVSGNKANKT VTMAYIGQFL GEKGTLMEVM KKDFPELGLT QKDCIEMSWI DSIIYNSGFP TNPPPPIEIL LQAKSPIGKV YFKGKSDFAK KPIPVLGLEG 401: MFKKLLEEDA ALVIWTPYGG KMDKIPESEI PFPHRNGTNF MIQYYRSWSD SEKRPNRRTK WIRELYGYMT PYVSSNPRQA YVNYRDLDLG QNKDNSKSNF 501: IEAKIWGANY FKDNFNRLVR IKSKVDPDNF FRHEQSIPTL PV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)