AT5G43730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.960 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (CC-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43740.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:17560267..17562813 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 96271.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.74 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 848 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVDWLSLLPW NKIFTAACGC FLSDSNYIHL MESNLDALQK TMEELKNGRD DLLARVSIEE DKGLQRLALV NGWLSRVQIV ESEFKDLLEA MSIETGRLCL 101: FGYCSEDCIS SYNYGGKVMK NLEEVKELLS KKNFEVVAQK IIPKAEKKHI QTTVGLDTMV GIAWESLIDD EIRTLGLYGM GGIGKTTLLE SLNNKFVELE 201: SEFDVVIWVV VSKDFQLEGI QDQILGRLRP DKEWERETES KKASLINNNL KRKKFVLLLD DLWSEVDLIK IGVPPPSREN GSKIVFTTRS KEVCKHMKAD 301: KQIKVDCLSP DEAWELFRLT VGDIILRSHQ DIPALARIVA AKCHGLPLAL NVIGKAMVCK ETVQEWRHAI NVLNSPGHKF PGMEERILPI LKFSYDSLKN 401: GEIKLCFLYC SLFPEDFEIE KDKLIEYWIC EGYINPNRYE DGGTNQGYDI IGLLVRAHLL IECELTDKVK MHDVIREMAL WINSDFGNQQ ETICVKSGAH 501: VRLIPNDISW EIVRQMSLIS TQVEKIACSP NCPNLSTLLL PYNKLVDISV GFFLFMPKLV VLDLSTNWSL IELPEEISNL GSLQYLNLSL TGIKSLPVGL 601: KKLRKLIYLN LEFTNVLESL VGIATTLPNL QVLKLFYSLF CVDDIIMEEL QRLKHLKILT ATIEDAMILE RVQGVDRLAS SIRGLCLRNM SAPRVILNSV 701: ALGGLQQLGI VSCNISEIEI DWLSKERRDH RSTSSPGFKQ LASITVIGLV GPRDLSWLLF AQNLKDIQVQ YSPTIEEIIN KQKGMSITKV HRDIVVPFGK 801: LESLHLYQLA ELTEICWNYQ TLPNLRESYV NYCPKLLEDI ANFPKLKG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)