AT1G72840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.562 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: ovule, embryo, sperm cell, root, seed; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G09430.1); Has 23413 Blast hits to 17312 proteins in 691 species: Archae - 12; Bacteria - 1355; Metazoa - 2695; Fungi - 176; Plants - 18489; Viruses - 0; Other Eukaryotes - 686 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:27410020..27413485 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 117679.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.53 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1042 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASSSSSSAT RLRHYDVFLS FRGVDTRQTI VSHLYVALRN NGVLTFKDDR KLEIGDTIAD GLVKAIQTSW FAVVILSENY ATSTWCLEEL RLIMQLHSEE 0101: QIKVLPIFYG VKPSDVRYQE GSFATAFQRY EADPEMEEKV SKWRRALTQV ANLSGKHSRN CVDEADMIAE VVGGISSRLP RMKSTDLINL VGMEAHMMKM 0201: TLLLNIGCED EVHMIGIWGM GGIGKSTIAK CLYDRFSRQF PAHCFLENVS KGYDIKHLQK ELLSHILYDE DVELWSMEAG SQEIKERLGH QKVFVVLDNV 0301: DKVEQLHGLA KDPSWFGPGS RIIITTRDKG LLNSCGVNNI YEVKCLDDKD ALQVFKKLAF GGRPPSDGFE QLFIRASRLA HGLPSALVAF ASHLSAIVAI 0401: DEWEDELALL ETFPQKNVQE ILRASYDGLD QYDKTVFLHV ACFFNGGHLR YIRAFLKNCD ARINHLAAKC LVNISIDGCI SMHILLVQTG REIVRQESDW 0501: RPSKQRFLWD PTEIHYVLDS NTGTRRVEGL SLHLCEMADT LLLRNSVFGP MHNLTFLKFF QHLGGNVSNL QLISDDYVLS RNLKLLHWDA YPLTILPPIF 0601: RPHTIIELSL RYSKLNSLWD GTKLLPNLRI LDVTGSRNLR ELPELSTAVN LEELILESCT SLVQIPESIN RLYLRKLNMM YCDGLEGVIL VNDLQEASLS 0701: RWGLKRIILN LPHSGATLSS LTDLAIQGKI FIKLSGLSGT GDHLSFSSVQ KTAHQSVTHL LNSGFFGLKS LDIKRFSYRL DPVNFSCLSF ADFPCLTELK 0801: LINLNIEDIP EDICQLQLLE TLDLGGNDFV YLPTSMGQLA MLKYLSLSNC RRLKALPQLS QVERLVLSGC VKLGSLMGIL GAGRYNLLDF CVEKCKSLGS 0901: LMGILSVEKS APGRNELLEL SLENCKSLVS LSEELSHFTK LTYLDLSSLE FRRIPTSIRE LSFMRTLYLN NCNKIFSLTD LPESLKYLYA HGCESLEHVN 1001: FSSNHSFNHL DFSHCISLEC ISDLVRDFMN EEYSQEVRLS SL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)