AT5G36950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DegP protease 10 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a putative DegP protease. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DegP protease 10 (DegP10); FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Serine endopeptidase DegP2 (InterPro:IPR015724), Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 3 (TAIR:AT1G65630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:14594992..14598216 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64729.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.12 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 586 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLLRSFRTVE LLRRISTSSV SGYRTSPSLL QRCNGFQSYL PHRVTTTESP FPSHISRFCS SQSANSQNEN RHTTLSSPVS SRRVNNRKIS RRRKAGKSLS 101: ISPAADAVDL ALDSVVKIFT VSTSPSYFLP WQNKSQRESM GSGFVISGRK IITNAHVVAD HSFVLVRKHG SSIKHRAEVQ AVGHECDLAI LVVDSEVFWE 201: GMNALELGDI PFLQEAVAVV GYPQGGDNIS VTKGVVSRVE PTQYVHGATQ LMAIQIDAAI NPGNSGGPAI MGNKVAGVAF QNLSGAENIG YIIPTPVIKH 301: FINGVEECGK YIGFCSMGVS CQPMENGELR SGFQMSSEMT GVLVSKINPL SDAHKILKKD DVLLAFDGVP IANDGTVPFR NRERITFDHL VSMKKPDETA 401: LVKVLREGKE HEFSITLRPL QPLVPVHQFD QLPSYYIFAG FVFVPLTQPY LHEYGEDWYN TSPRTLCHRA LKDLPKKAGQ QLVIVSQVLM DDINTGYERL 501: AELQVNKVNG VEVNNLRHLC QLIENCNTEK LRIDLDDESR VIVLNYQSAK IATSLILKRH RIASAISSDL LIEQNLETEL ASCSAV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)