AT5G27220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.663 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Frigida-like protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Frigida-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:9578757..9582752 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 135838.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.27 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||||||
| Length | 1181 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEEIKLENEI RLCDVKANNI RKTMDMIKSQ ASDVLILNLQ WCDFEEHLKS ASEKLELRFR ELVLKEVELQ NRSFALEERA KVVEAAEAEM GDLEMKASGF 0101: RSEVEEKREE LGCLRKSLEE CSVEERSKRG QLSEIVELLR KSQVDLDLKG EELRQMVTHL ERYRVEVKEE KEHLRRTDNG RRELEEEIER KTKDLTLVMN 0201: KIVDCDKRIE TRSLELIKTQ GEVELKEKQL DQMKIDLEKY CVDVNAEKKN LGRTQTHRRK LEEEIERKTK DLTLVMDKIA ECEKLFERRS LELIKTQGEV 0301: ELKGKQLEQM DIDLERHRGE VNVVMEHLEK SQTRSRELAE EIERKRKELT AVLDKTAEYG KTIELVEEEL ALQQKLLDIR SSELVSKKKE LDGLSLDLEL 0401: VNSLNNELKE TVQRIESKGK ELEDMERLIQ ERSGHNESIK LLLEEHSEEL AIKEERHNEI AEAVRKLSLE IVSKEKTIQQ LSEKQHSKQT KLDSTEKCLE 0501: ETTAELVSKE NELCSVKDTY RECLQNWEIK EKELKSFQEE VKKIQDSLKD FQSKEAELVK LKESLTEHEK ELGLKKKQIH VRSEKIELKD KKLDAREERL 0601: DKKDEQLKSA EQKLAKCVKE YELNAKKLAS FCQQNNPDQQ VDLVRDASVC DEKTLQLLLR GHLKKCDQLH LDVLRALKAS SDPAKLVLNT IQRLHEKMAV 0701: TKLDPDSVRR GSICLLECLM DMSPEPKTEV QVEAIKSVTE WKNTTLVKAE NPVEVLGFLH FLSAFSLAYT FDADKVQNLF DAAFLRQYAP SLCEALGVSS 0801: LAPVNNVLSL DDKPEQQPPE APIINSSDSR STNVQETIAS SHLGNVDVLL DPEGSTSFSP NEVFTGLQGM IDPASYVLNV VNDELLGAQQ RGELGLAEPV 0901: IKTLIPLLEE LPRVVKSSKH LLSDALQVAT RWSWMMGNST QMSPLEAWGF LQLIVAYGLV HATSQDNTLR FASYVAHFKQ APKLFESLGL SYAMPNLVKK 1001: LLDERHYFMA IRFIFYFKLK FNFSPLELLK DEIITLRVST KEKRRLDSQA EDRDAAKLKD IIELIEDFKL DIDLPVELIV KFMVPRENQN ENQYVVSSFV 1101: PVQSPQVHMQ ASHGSNPTFP TSLGTSPNQQ VLDLETYQAG GSIAFQAQSS HHTGYKRTRM DPSVSRPVIR PCFNPSSYGR Y |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)