AT5G23490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08440.1); Has 202 Blast hits to 197 proteins in 48 species: Archae - 0; Bacteria - 13; Metazoa - 25; Fungi - 9; Plants - 109; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:7919831..7926499 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 81120.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.81 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||
| Length | 729 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MENGHEERLA ERFSGLGFED SSLLPENEFK NDNLFQVIKA VEAAETTIKE QVEENSRLKA ELQRSALELA KYKSDESLPQ TSNIGDHTNS TTVSRLVHQP 101: VDWKPVVIKA SDADSSGLLV VHPHVNANGE EATVSNRFES HSEETISNGT VKRAIDGTGP SQFDSSISPM RMRLEGEHDA HFSSSTHGSM PVGEVNHSGN 201: AWKQDLIHKV QEQEQEISQL RRYLTDCSVK EAQIRNEKYV LEKRIAYMRL AFDQQQQDLV DASSKALSYR QEIIEENIRL TYALQATQQE RSTFVSYLLP 301: LLSEYSLQPQ VSDAQSIVSN VKVLFKHLQE KLLLTETKLK ESEYQLAPWQ SDVNHSNDSP LAPSRSAGVA LTHSTKDSMY SHDHTAIDWN LERQQQDEPG 401: SSAVRNYHLD DSSTFSPLEN SQSAAFEMHV QPGTSVDESP AHKKVDETPP KHVQFLEPIS KTVVDDAQNP SYGSAFDDPS SSNSPLLSPV FEEPSSSFSE 501: GGDDDPLPGI EDLQISGEPY PGHELQACGY SINGTTSCNF EWVCHLEDGS VNYIDGAKQP NYLVTADDVD LYLAIEVQPL DDRNRKGELV KVFANDNRKI 601: ACHPDMQSNI EKTLHTGHAS YKVSLAVGFV DIWEAATLSI KREGYSIKCI SDLTIAEKFS ASTTVTIPFG QPAELVIIGS DGSEHSLRAD NGSPDLIGSR 701: DEIVLTLRLF IKRALQRKKG KKRVFLFNK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)