AT5G20420.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : chromatin remodeling 42 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
chromatin remodeling 42 (CHR42); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 38 (TAIR:AT3G42670.1); Has 13786 Blast hits to 12302 proteins in 1638 species: Archae - 85; Bacteria - 4157; Metazoa - 3202; Fungi - 3141; Plants - 1285; Viruses - 57; Other Eukaryotes - 1859 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6899015..6903266 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 145322.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.40 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1261 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKKRGFYNLK HPFDPCPFEF FCSGTWKPVE YMRIEDGMMT IRLLENGYVL EDIRPFQRLR LRSRKAALSD CICFLRPDID VCVLYRIHED DLEPVWVDAR 0101: IVSIERKPHE SECSCKINVR IYIDQGCIGS EKQRINRDSV VIGLNQISIL QKFYKEQSTD QFYRWRFSED CTSLMKTRLS LGKFLPDLSW LTVTSTLKSI 0201: VFQIRTVQTK MVYQIVTDEE GSSSTLSSMN ITLEDGVSLS KVVKFNPADI LDDSQDLEIK QETDYYQEED EVVELRRSKR RNVRPDIYTG CDYEPDTIDG 0301: WVRMMPYQFG KCAVNVESDE DEDDNNEDGD TNDDLYIPLS RLFIKKKKTN SREAKPKSRK GEIVVIDKRR VHGFGRKERK SELSVIPFTP VFEPIPLEQF 0401: GLNANSFGGG GSFSRSQYFD ETEKYRSKGM KYGKKMTEME EMMEADLCWK GPNQVKSFQK RTSRSSRSVA PKTEDSDEPR VYKKVTLSAG AYNKLIDTYM 0501: NNIESTIAAK DEPTSVVDQW EELKKTNFAF KLHGDMEKNL SEDGEGETSE NEMLWREMEL CLASSYILDD NEVRVDNEAF EKARSGCEHD YRLEEEIGMC 0601: CRLCGHVGSE IKDVSAPFAE HKKWTIETKH IEEDDIKTKL SHKEAQTKDF SMISDSSEML AAEESDNVWA LIPKLKRKLH VHQRRAFEFL WRNVAGSVEP 0701: SLMDPTSGNI GGCVISHSPG AGKTFLIIAF LTSYLKLFPG KRPLVLAPKT TLYTWYKEFI KWEIPVPVHL IHGRRTYCTF KQNKTVQFNG VPKPSRDVMH 0801: VLDCLEKIQK WHAHPSVLVM GYTSFTTLMR EDSKFAHRKY MAKVLRESPG LLVLDEGHNP RSTKSRLRKA LMKVGTDLRI LLSGTLFQNN FCEYFNTLCL 0901: ARPKFIHEVL MELDQKFKTN HGVNKAPHLL ENRARKLFLD IIAKKIDASV GDERLQGLNM LKNMTNGFID NYEGSGSGSG DALPGLQIYT LVMNSTDIQH 1001: KILTKLQDVI KTYFGYPLEV ELQITLAAIH PWLVTSSNCC TKFFNPQELS EIGKLKHDAK KGSKVMFVLN LIFRVVKREK ILIFCHNIAP IRMFTELFEN 1101: IFRWQRGREI LTLTGDLELF ERGRVIDKFE EPGNPSRVLL ASITACAEGI SLTAASRVIM LDSEWNPSKT KQAIARAFRP GQQKVVYVYQ LLSRGTLEED 1201: KYRRTTWKEW VSCMIFSEEF VADPSLWQAE KIEDDILREI VGEDKVKSFH MIMKNEKAST G |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)