AT5G19840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.951 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT3G20810.2); Has 1685 Blast hits to 1680 proteins in 337 species: Archae - 0; Bacteria - 393; Metazoa - 598; Fungi - 233; Plants - 224; Viruses - 6; Other Eukaryotes - 231 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:6705372..6709382 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 57134.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.01 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||
| Length | 505 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPTGCEFPMI KTFENALTAA DFESTVELTN FPAVFRGCAS VWDAYSKWNP FNSGLDYLEE RAGSVEVEAM LSRTAPVFNG DIRSHERVSL PFSDFIRFCK 101: QHMRGKGNGS GVDAKSADLN PMCEDYRPGQ IYLAQFPILN DEKEEKVLLK ILRQDIQTPT FLDAKSLSSI NFWMNSAEAR SSTHYDPHHN LLCVVSGRKK 201: VVLWPPSASP SLYPMPIYGE ASNHSSVGLE NPNLSDYPRA EHSLKQSQEI TLNAGDAVFI PEGWFHQVDS DELTVAVNFW WQSNYMSNMP EHMDSYYLRR 301: ITRRLIDREM SLLVSKPSST DLRHLSEHID QSRIEMAEGG NDNIGNESIK KGLSTLHEKA SLHDLDPSAS QALHDLISLV HDHVNAVDTK DDRVAHLLWN 401: LEASRLRDVL LAMARYFPRT LEALILHMLS PIAAEVLTQK FDEIDQQTGE EDRTQFFREF YSAFDDEAAA MDIILSRKEA FAFQAFKNVL DKFLGVNIAS 501: PTTNI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)