AT2G17600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.875 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G17590.1); Has 1546 Blast hits to 615 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 1525; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:7654477..7656219 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67318.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.46 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||
| Length | 580 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAANEEEPIC RLSHPTHSHT LSRRAGRIPP SGCFACDKEE PSPCSTFHYS CTTCDVEFHD ICHVYPRKLT HPYHLQHPLT LTTQNTEIEI ISKNPEYGYI 101: FKNCNWCGDD LRDGSQFYHC SICNFCLDLS CSQNFPTLTI TNPKSHHHSL FLFPWPLLIP CEACELVSLL EPSYTCFQCN YLVHESCINL PRVIKITRHP 201: HRLSHTPFLP PTTPSCRVCY KTVDIKYGQY SCDHEGCSYV AHSKCATHMH VWDGRELEWE PEELDETEDI VPFKKVGDNM IKYFCHEHHL KLEKYDSVRD 301: AKKQCQACIL RIDSYDFYNC VQCDFFLHEV CAGLPRKLAH ALHKHPLVLD PSPILDYSST SCSTCAREST GFRYKCSKTD CDDEITIQID FRCILVPDCF 401: THKSHEHPLF ISTSYSRKGN ISCDGCKDSV RDEYYLQCTI CSFAMCYRCA TIPYELYYKY DAHLLSLCYG EDAEKAYWCE VCEKELNPRE WFYSCNKCCI 501: TIHLECIFGS SVYIKSGYTF YFGSASMKIL GNNSHTRPIC YKCDHRCPDS VYYKLFEKVF CSWLCVWTSD IESFDNVEKE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)