AT5G15930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.776 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : plant adhesion molecule 1 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a putative plant adhesion molecule. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
plant adhesion molecule 1 (PAM1); FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT3G02460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:5200329..5202250 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41030.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.80 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||
| Length | 356 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MERKRTKDSE PGPVPLLVPV DRFGFLKQEH GSSPQRFTKT KSSINYEKEE KRVTKWRKMI GTGGSDWKHY VRRKPHVVKR RIRKGIPDCL RGLVWQLISG 101: SRDLLLMNPG VYVQLVIYET SASELDIIRD ISRTFPSHVF FQKRHGPGQR SLYNVLKAYS VYDRDVGYVQ GMGFIAGLLL LYMSEEDAFW LLVALLKGAV 201: HSPIEGLYQA GLPLVQQYLL QFDQLVRELM PKLGEHFTQE MINPSMYASQ WFITVFSYSL PFHSALRIWD VFLAEGVKIV FKVGLALLKH CHDDLLKLPF 301: EELMHALRNF PEDAMDPDTL LPLAYSIKVS KRLEEMKQDC DKAVAKPTQT AKSVRQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)