AT5G07510.1::SUBA5

AT5G07510.1

Subcellular Consensus
(Prediction and Experimental)

min:

:max

SUBAcon:
extracellular 0.957
What is SUBAcon?

Predictors

External Curations

no data

Experimental Localisations and PPI

FP	MS/MS	PPI
		PMID:24833385 (2014): AT4G37680.1:None: PMID:24833385 (2014): AT3G17000.1:None: PMID:24833385 (2014): AT1G17280.1:None: PMID:24833385 (2014): AT3G12180.1:None: PMID:24833385 (2014): AT3G66654.1:None: PMID:24833385 (2014): AT5G49540.1:None: PMID:24833385 (2014): AT1G21240.1:None:

SUBAcon links
AGI-AGI relationships

Coexpression	PPI
AT5G07530.1 plasma membrane [10.71] AT5G07540.1 extracellular [10.25] AT2G19070.1 plasma membrane [7.96] AT1G75930.1 extracellular [7.73] AT1G23570.1 nucleus [6.88] AT1G28430.1 endoplasmic reticulum [6.64] AT1G23240.1 plasma membrane [6.5] AT3G42850.1 plastid [6.34] AT1G68875.1 extracellular [6.27] AT3G25050.1 extracellular [5.77]	AT3G12180.1 endoplasmic reticulum AT3G17000.1 endoplasmic reticulum AT1G17280.1 golgi AT3G66654.1 golgi AT4G37680.1 golgi AT1G21240.1 plasma membrane AT5G49540.1 vacuole

Description (TAIR10)

protein_coding : glycine-rich protein 14

Curator
Summary (TAIR10)

encodes a glycine-rich protein that is expressed in low abundance in stems and leaves, and very low abundance in flowers.

Computational
Description (TAIR10)

glycine-rich protein 14 (GRP14); CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: glycine-rich protein 18 (TAIR:AT5G07520.1); Has 29506 Blast hits to 10438 proteins in 893 species: Archae - 17; Bacteria - 14272; Metazoa - 7933; Fungi - 1193; Plants - 3433; Viruses - 277; Other Eukaryotes - 2381 (source: NCBI BLink).

Protein Annotations

EMBL:CP002688	EMBL:DQ446928	EnsemblPlants:AT5G07510	EnsemblPlants:AT5G07510.1
entrez:830644	ExpressionAtlas:Q1PDZ0	GeneID:830644	GO:GO:0008289
GO:GO:0012511	GO:GO:0016021	GO:GO:0019915	Gramene:AT5G07510.1
hmmpanther:PTHR33203	hmmpanther:PTHR33203:SF7	InterPro:IPR000136	OMA:GNISKWL
Pfam:PF01277	Proteomes:UP000006548	RefSeq:NP_196368.2	STRING:3702.AT5G07510.1
TAIR:AT5G07510	tair10-symbols:ATGRP-4	tair10-symbols:ATGRP14	tair10-symbols:GRP-4
tair10-symbols:GRP14	TMHMM:TMhelix	UniGene:At.46233	UniProt:Q1PDZ0

Coordinates (TAIR10)

chr5:-:2377858..2378763

Molecular Weight (calculated)

18463.80 Da

IEP (calculated)

12.43

GRAVY (calculated)

0.63

Length

193 amino acids

Sequence (TAIR10)
(BLAST)

001: MFSFLILQVS EVFQVVIAAV VSIVFLVLAG LTLAGSATAL TITTPLFIIF SPILVPATIA TAVITTGLTA GGALGTMAAA SLLSLRRRFG RRRFGGLRRF
101: GGGRRFGGRF GKPGGGGLGG GGLPGGLGGL GGGGLPGGLG GLGGGENPLA KISKMFGPGA AGAASGDAPP AETAPAAGAA PAAGAEPAAP PTW