AT5G02560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : histone H2A 12 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes HTA12, a histone H2A protein. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
histone H2A 12 (HTA12); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2A 6 (TAIR:AT5G59870.1); Has 3926 Blast hits to 3921 proteins in 369 species: Archae - 0; Bacteria - 0; Metazoa - 2576; Fungi - 297; Plants - 619; Viruses - 2; Other Eukaryotes - 432 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:575437..576456 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 16219.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 11.48 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||||||
| Length | 153 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSGTKVKKG AAGRRSGGGP KKKPVSRSVK SGLQFPVGRI GRYLKKGRYS KRVGTGAPVY LAAVLEYLAA EVLELAGNAA RDNKKNRIIP RHVLLAVRND 101: EELGTLLKGV TIAHGGVLPN INPILLPKKS EKAASTTKTP KSPSKATKSP KKS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)