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AT5G58740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HSP20-like chaperones superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HSP20-like chaperones superfamily protein; CONTAINS InterPro DOMAIN/s: CS-like domain (InterPro:IPR007052), HSP20-like chaperone (InterPro:IPR008978), CS domain (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT4G27890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DNASU:835988eggNOG:ENOG410XQVUeggNOG:KOG2265EMBL:AY074384
EMBL:AY117251EMBL:CP002688EnsemblPlants:AT5G58740EnsemblPlants:AT5G58740.1
entrez:835988Gene3D:2.60.40.790GeneID:835988Gramene:AT5G58740.1
hmmpanther:PTHR12356hmmpanther:PTHR12356:SF18HOGENOM:HOG000282991InterPro:IPR007052
InterPro:IPR008978KEGG:ath:AT5G58740OMA:NREAGNCPfam:PF04969
Pfscan:PS51203PhylomeDB:Q8VXX3PROSITE:PS51203Proteomes:UP000006548
RefSeq:NP_200682.1SMR:Q8VXX3STRING:3702.AT5G58740.1SUPFAM:SSF49764
TAIR:AT5G58740UniGene:At.42961UniProt:Q8VXX3
Coordinates (TAIR10) chr5:-:23725936..23727528
Molecular Weight (calculated) 18212.50 Da
IEP (calculated) 6.15
GRAVY (calculated) -0.74
Length 158 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEKLAPEKR HDFIHNGQKV FEWDQTLEEV NMYITLPPNV HPKSFHCKIQ SKHIEVGIKG NPPYLNHDLS APVKTDCSFW TLEDDIMHIT LQKREKGQTW
101: ASPILGQGQL DPYATDLEQK RLMLQRFQEE NPGFDFSQAQ FSGNCPDPRS FMGGIRSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)