AT4G19990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FAR1-related sequence 1 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FAR1-related sequence 1 (FRS1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: far-red elongated hypocotyls 3 (TAIR:AT3G22170.2); Has 1641 Blast hits to 1185 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 8; Plants - 1612; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:10832848..10835389 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80316.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.11 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.77 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 687 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSGECSNVQ LDDHRKNNLE IDEGREFESK EEAFEFYKEY ANSVGFTTII KASRRSRMTG KFIDAKFVCT RYGSKKEDID TGLGTDGFNI PQARKRGRIN 101: RSSSKTDCKA FLHVKRRQDG RWVVRSLVKE HNHEIFTGQA DSLRELSGRR KLEKLNGAIV KEVKSRKLED GDVERLLNFF TDMQVENPFF FYSIDLSEEQ 201: SLRNIFWVDA KAMHGCRPRV ILTKHDQMLK EAVLEVFPSS RHCFYMWDTL GQMPEKLGHV IRLEKKLVDE INDAIYGSCQ SEDFEKNWWE VVDRFHMRDN 301: VWLQSLYEDR EYWVPVYMKD VSLAGMCTAQ RSDSVNSGLD KYIQRKTTFK AFLEQYKKMI QERYEEEEKS EIETLYKQPG LKSPSPFGKQ MAEVYTREMF 401: KKFQVEVLGG VACHPKKESE EDGVNKRTFR VQDYEQNRSF VVVWNSESSE VVCSCRLFEL KGFLCRHAMI VLQMSGELSI PSQYVLKRWT KDAKSREVME 501: SDQTDVESTK AQRYKDLCLR SLKLSEEASL SEESYNAVVN VLNEALRKWE NKSNLIQNLE ESESVTAQDL PIHEEQNNTY DMNKDDNVAD TGQEYSLQEV 601: WKVTALQEQR NRYSILDDYL SAQHMSHEMG QINSMASNRN GYCSVHQNIH SLQGQSITHP RLYETEQSSF RPEAMYERLQ DMVKDLN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)