AT4G18840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (mitochondrial marker)
Arabidopsis cell culture (plastidal marker)
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G74630.1); Has 40182 Blast hits to 14292 proteins in 243 species: Archae - 8; Bacteria - 21; Metazoa - 44; Fungi - 131; Plants - 39337; Viruses - 0; Other Eukaryotes - 641 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:10338719..10340356 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60845.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.30 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 545 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVEKDIYMCA EIIIRPQAYN LRLLQKENLK KMSVCSSTPV PILSFTERAK SLTEIQQAHA FMLKTGLFHD TFSASKLVAF AATNPEPKTV SYAHSILNRI 101: GSPNGFTHNS VIRAYANSST PEVALTVFRE MLLGPVFPDK YSFTFVLKAC AAFCGFEEGR QIHGLFIKSG LVTDVFVENT LVNVYGRSGY FEIARKVLDR 201: MPVRDAVSWN SLLSAYLEKG LVDEARALFD EMEERNVESW NFMISGYAAA GLVKEAKEVF DSMPVRDVVS WNAMVTAYAH VGCYNEVLEV FNKMLDDSTE 301: KPDGFTLVSV LSACASLGSL SQGEWVHVYI DKHGIEIEGF LATALVDMYS KCGKIDKALE VFRATSKRDV STWNSIISDL SVHGLGKDAL EIFSEMVYEG 401: FKPNGITFIG VLSACNHVGM LDQARKLFEM MSSVYRVEPT IEHYGCMVDL LGRMGKIEEA EELVNEIPAD EASILLESLL GACKRFGQLE QAERIANRLL 501: ELNLRDSSGY AQMSNLYASD GRWEKVIDGR RNMRAERVNR SLDVA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)