AT4G14820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 42785 Blast hits to 14682 proteins in 270 species: Archae - 0; Bacteria - 16; Metazoa - 63; Fungi - 147; Plants - 41807; Viruses - 0; Other Eukaryotes - 752 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:8507794..8510038 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82117.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.43 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 722 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTLPPPIAST AANTILEKLS FCKSLNHIKQ LHAHILRTVI NHKLNSFLFN LSVSSSSINL SYALNVFSSI PSPPESIVFN PFLRDLSRSS EPRATILFYQ 101: RIRHVGGRLD QFSFLPILKA VSKVSALFEG MELHGVAFKI ATLCDPFVET GFMDMYASCG RINYARNVFD EMSHRDVVTW NTMIERYCRF GLVDEAFKLF 201: EEMKDSNVMP DEMILCNIVS ACGRTGNMRY NRAIYEFLIE NDVRMDTHLL TALVTMYAGA GCMDMAREFF RKMSVRNLFV STAMVSGYSK CGRLDDAQVI 301: FDQTEKKDLV CWTTMISAYV ESDYPQEALR VFEEMCCSGI KPDVVSMFSV ISACANLGIL DKAKWVHSCI HVNGLESELS INNALINMYA KCGGLDATRD 401: VFEKMPRRNV VSWSSMINAL SMHGEASDAL SLFARMKQEN VEPNEVTFVG VLYGCSHSGL VEEGKKIFAS MTDEYNITPK LEHYGCMVDL FGRANLLREA 501: LEVIESMPVA SNVVIWGSLM SACRIHGELE LGKFAAKRIL ELEPDHDGAL VLMSNIYARE QRWEDVRNIR RVMEEKNVFK EKGLSRIDQN GKSHEFLIGD 601: KRHKQSNEIY AKLDEVVSKL KLAGYVPDCG SVLVDVEEEE KKDLVLWHSE KLALCFGLMN EEKEEEKDSC GVIRIVKNLR VCEDCHLFFK LVSKVYEREI 701: IVRDRTRFHC YKNGLCSCRD YW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)