AT4G01040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycosyl hydrolase superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Chitinase II (InterPro:IPR011583), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 828 Blast hits to 823 proteins in 284 species: Archae - 0; Bacteria - 578; Metazoa - 178; Fungi - 2; Plants - 34; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:453383..455407 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49145.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.45 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||
| Length | 430 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARRRRSSAA ESLKRRNDGY ESLCQVVQQD SDRRLITIFV IFFIVIPAVS IAVYKVKFAD RVIQTESSIR QKGIVKTDIN FQEILTEHSK ASENSTRHYD 101: YPVLAYITPW NSKGYDMAKI FNSKFTHLSP VWYDLKSQGS GLVLEGRHNA DKGWIQELRS RGNALILPRV VLEAIPGEML NKKKLREKAI SLIVTECKEM 201: EYNGIVLESW SRWAAYGVLH DPDLRKMALK FVKQLGDALH STSSPRNNQQ HMQFMYVVGP PRSEKLQMYD FGPEDLQFLK DSVDGFSLMT YDFSNPQNPG 301: PNAPVKWIDL TLKLLLGSSN NIDSNIARKV LLGINFYGND FVISGDSGGG GAITGRDYLA LLQKHKPTFR WDKESGEHLF MYRDDKNIKH AVFYPTLMSI 401: LLRLENARLW GIGISIWEIG QGLDYFFDLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)