AT3G60880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : dihydrodipicolinate synthase 1 | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a dihydropicolinate synthase involved in lysine biosynthesis. The enzyme is allosterically inhibited by lysine. It is predicted to localize to the cholorplast. | ||||||||||||||||||||||||
| Computational Description (TAIR10) |
dihydrodipicolinate synthase 1 (DHDPS1); FUNCTIONS IN: dihydrodipicolinate synthase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate, metabolic process, diaminopimelate biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Dihydrodipicolinate synthase subfamily (InterPro:IPR005263), Dihydrodipicolinate synthetase (InterPro:IPR002220), Dihydrodipicolinate synthetase, active site (InterPro:IPR020625), Dihydrodipicolinate synthetase, conserved site (InterPro:IPR020624); BEST Arabidopsis thaliana protein match is: dihydrodipicolinate synthase (TAIR:AT2G45440.1); Has 13092 Blast hits to 13092 proteins in 2641 species: Archae - 342; Bacteria - 9390; Metazoa - 97; Fungi - 273; Plants - 96; Viruses - 0; Other Eukaryotes - 2894 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:22495086..22496542 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 40466.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.96 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||
| Length | 364 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSALKNYGLI SIDSALHFPR SNQLQSYKRN AKWVSPIAAV VPNFHLPMRS LEDKNRTNTD DIRSLRVITA IKTPYLPDGR FDLQAYDDLV NTQIENGAEG 101: VIVGGTTGEG QLMSWDEHIM LIGHTVNCFG GRIKVIGNTG SNSTREAIHA TEQGFAMGMH GALHINPYYG KTSIEGMNAH FQTVLHMGPT IIYNVPGRTC 201: QDIPPQVIFK LSQNPNMAGV KECVGNNRVE EYTEKGIVVW SGNDDQCHDS RWDHGATGVI SVTSNLVPGL MRKLMFEGRN SALNAKLLPL MDWLFQEPNP 301: IGVNTALAQL GVARPVFRLP YVPLPLSKRI EFVKLVKEIG REHFVGDRDV QVLDDDDFIL IGRY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)