AT1G80620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : S15/NS1, RNA-binding protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
S15/NS1, RNA-binding protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: small ribosomal subunit, ribosome, intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15 (InterPro:IPR000589), Ribosomal protein S15, bacterial-type (InterPro:IPR005290), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: S15/NS1, RNA-binding protein (TAIR:AT1G15810.1); Has 7972 Blast hits to 7972 proteins in 2715 species: Archae - 0; Bacteria - 5433; Metazoa - 85; Fungi - 116; Plants - 310; Viruses - 0; Other Eukaryotes - 2028 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:30305404..30307182 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47403.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.21 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.88 | ||||||||||||||||||||||||||||||||||||||||
| Length | 414 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALHLARPKQ RLHSNPSLIH LFSTSSSSSS SSPQDGNESN EQPSQSSSDY KISSYFSGIR SSLKQTQSQD GKRQFVRFDA KPQNSLSGNQ DIRRNLNEFR 101: SRATAPPPRD MQDLFKQNVL SKSGGTRRIE GVPLTNIKAN LRQMRPQQAT TESKWANLSG IQNIMKTNIN DNIRSNVIGG AAEGLPHSVV GKELEEEDVT 201: EEEMKSEFIK SYDPIELGEK LRLYRPEGKK EEGWFSLQEL NQRLVKLRAM EEEQFQKTSI VHPSFVNNLR SEFHKFTKAQ KSDPFQNTNI WGVLSGTPKY 301: MLEPPKDQLV ETYFHPDNMS SAEKMKIELA KVREEFKMSE SDCGSARVQV AQLTTKIKHL SSVLHKKDKH SRKGLIAMVQ RRKKLLKYMR RTDWDSYCLS 401: LSKLGLRDNP DYKF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)