AT3G48195.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.949 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Phox (PX) domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Phox (PX) domain-containing protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: intracellular signaling pathway, cell communication; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Phox-like (InterPro:IPR001683); Has 654 Blast hits to 601 proteins in 103 species: Archae - 0; Bacteria - 16; Metazoa - 551; Fungi - 11; Plants - 27; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:17828706..17832388 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 103595.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.64 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||
| Length | 938 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MINGEEESSR VDSPGSSLHY SSCGESEFER YCSANSALGT PSMCSSTGPF QDSEFENFSL GPSLVKLSSL DMSRLGDRGI HFFDEGGSCN GRSSSAPGLN 101: TGNVNIDMCG DLMDGGATIE KDSGIDREDG SSIDDDEHSD GDDSLSDSGD HSRNYVSRNL QFQKEAKDEN DNPFLINSST AFGTNDWDEF ELEATELVDT 201: QFDFSGFEKR DKGCTESEGT STDLFSVALQ KLPDVVQAEK GEEHENVTVS TRHAPDVGDF SANIEDIRSR DFGDLSAEVK TLVVRQSLVT DEPLRGSCLG 301: NSQTEDRPVV MNNLQSCSAD DVLDITPTEL GIEDSSGGVC DLDDDVSSGL LHESSEDGKQ SNPFGECTSE PLLASQNSDM PSSRDSHPVT NASKVTYTQP 401: KKENTELNDF YDDFVHDMEE ILLDSGESSG VRFSKNDKMF QLQLSLPNRD GGQTATTSGL DDSSPTVSQR FRIDRVEVVG VKQKKGDVSL SERLVGVKEY 501: TVYVIRVWSG KDKWEIERRY RDFYSLYRRL TSLFADQGWT LPTPWTSVER ESRKIFGTSP NAVAERTVLI QDCLNSVLQS RFFPTLPNAL LRFLSPQDAY 601: ANSSGLDSIV SPTGSAAIDA ATTSSSYGNT ISFIVDIRPH KSVKQLLEAQ HYICAGCHRY FDDGATLVRD FVKALGWGKP RLCEYTGHLF CSSCHTNDMA 701: VLPATVLHHW DFNRYPVSQL AKSYLDSIHE QPMLCVSAVN PFLSSKVPAL NHIMSIRKRI TIMLPYVRCP FQKTLYKGLS SRRYLLESSE FFALRDLIDL 801: SKGPFAALPA IVETVRRKIL EHITEQCLVC CDVGVPCNAR QACDDTSSLI FPFQEKDEVS KCRLCGSVFH KKCLSRLSNC HCGAQLKPNK NPGELQVSEK 901: KSDSTSVLPL RFLSSLFGKT KQDKETTILM GSLPTNDL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)