AT3G21295.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tudor/PWWP/MBT superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tudor/PWWP/MBT superfamily protein; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G51745.1); Has 561 Blast hits to 428 proteins in 108 species: Archae - 2; Bacteria - 226; Metazoa - 60; Fungi - 64; Plants - 94; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:7489635..7492296 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69862.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.33 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||
| Length | 645 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSSDERNCK AIDASVGGLV WVRRRNGAWW PGRIMAHHEV PDGTIVSPKS GTPIKLLGRD DASVDWYNLE KSKRVKAFRC GEYDACIATA KATASTTGKK 101: AVKYARREDA IAHALEIENA HLAKDHPPCI EKASTSGEVS RKGIEDSGDV AETEVALQST MSLKKTKNGK ASKVQPLSEK RRRTPNDSED DGTQTNKRMR 201: GLEDIGMGTG SKGKVQVGAL LEDTQENGFK SDTNNINDSV SNGSLSNGSS RDCSPSMKRK RSPVVIANDY SKRKNRRRTL TKVLESTATV SIPGTCDKLV 301: NSDCLSLPGV SESDNNSDSN EVFSENVSEN IVEVINDKGK ESEVSNISVL AKDDSSNGLF DVPLNGDEKY PSGISTVPFT SSSPRKALVS GPTRRFGQSS 401: HDDVVKSEGS NGSPSTSPAA TLFNGIKKST SKWQLKGKRN SRQMSKKQVE RRNAYAEEAN NNALPHWSVS DQKPRSLFSV GTQAMGRNSE LYDVKIEVKA 501: NYKPRNVPLI SLRSKLNGEA IVGHPSVVEV LEDGSCGHIV SSHRIDDAKP KPSSKKKSKK KKPHFPPQAS KSKKSSSLAI KTRCLSALSG QKLTLSSKKK 601: VMIESTKERI VACIPLKVVF SRINEAVKGS ARQVHRSLPS AGNTG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)