AT3G29375.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.435 plasma membrane 0.376 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : XH domain-containing protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
XH domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT1G80790.1); Has 4410 Blast hits to 869 proteins in 187 species: Archae - 2; Bacteria - 84; Metazoa - 239; Fungi - 227; Plants - 231; Viruses - 48; Other Eukaryotes - 3579 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:11280151..11281829 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 40002.40 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.14 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||
| Length | 355 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSPPFPKSWE TKKQKTKVVS WFPCMYLLGL LLGWAEMLSP SINPTSSATP SFEFGTVPSS PSTAPSTSLL FGSSPSIFGA TGSSPSSLPS SASTTTHATS 101: SVTTTQPSLG VASSSGTAIG SPNMPSEITE EIVKEIILVE GNNESQEHKW RSMKQENEEL KKRLRVMKEE LEDKDSELEQ REGLINALLV KERYANDEIL 201: EAQKLLISQM RDLTDDRTTI RVKRMGHLDV EPFVKASKRR LTGNDTEVYA EWEENLRDPH WQPFKRVETG NIVKEVVDEE DEKLKNLREE WGEEVMNAVK 301: TALEEVNEFN PSGRHVVPTL WNSEQGRVAT LREVIAHMTH EIKTLKRKKN LKHRK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)