AT3G25970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.959 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 41202 Blast hits to 13044 proteins in 247 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 58; Plants - 40527; Viruses - 0; Other Eukaryotes - 488 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:9500116..9502221 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78186.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.04 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||||||||||||||||||
| Length | 701 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKALLASLLE SSLNSFQKLS LTHCYAIKCG SISDIYVSNR ILDSYIKFGF LGYANMLFDE MPKRDSVSWN TMISGYTSCG KLEDAWCLFT CMKRSGSDVD 101: GYSFSRLLKG IASVKRFDLG EQVHGLVIKG GYECNVYVGS SLVDMYAKCE RVEDAFEAFK EISEPNSVSW NALIAGFVQV RDIKTAFWLL GLMEMKAAVT 201: MDAGTFAPLL TLLDDPMFCN LLKQVHAKVL KLGLQHEITI CNAMISSYAD CGSVSDAKRV FDGLGGSKDL ISWNSMIAGF SKHELKESAF ELFIQMQRHW 301: VETDIYTYTG LLSACSGEEH QIFGKSLHGM VIKKGLEQVT SATNALISMY IQFPTGTMED ALSLFESLKS KDLISWNSII TGFAQKGLSE DAVKFFSYLR 401: SSEIKVDDYA FSALLRSCSD LATLQLGQQI HALATKSGFV SNEFVISSLI VMYSKCGIIE SARKCFQQIS SKHSTVAWNA MILGYAQHGL GQVSLDLFSQ 501: MCNQNVKLDH VTFTAILTAC SHTGLIQEGL ELLNLMEPVY KIQPRMEHYA AAVDLLGRAG LVNKAKELIE SMPLNPDPMV LKTFLGVCRA CGEIEMATQV 601: ANHLLEIEPE DHFTYVSLSH MYSDLKKWEE KASVKKMMKE RGVKKVPGWS WIEIRNQVKA FNAEDRSNPL CQDIYMMIKD LTQEMQWLDS DNGVDADSLH 701: A |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)