AT3G23470.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.972 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cyclopropane-fatty-acyl-phospholipid synthase | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cyclopropane-fatty-acyl-phospholipid synthase; FUNCTIONS IN: cyclopropane-fatty-acyl-phospholipid synthase activity; INVOLVED IN: lipid biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase (InterPro:IPR003333); BEST Arabidopsis thaliana protein match is: Cyclopropane-fatty-acyl-phospholipid synthase (TAIR:AT3G23480.1); Has 719 Blast hits to 717 proteins in 247 species: Archae - 7; Bacteria - 630; Metazoa - 1; Fungi - 36; Plants - 32; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:8415565..8418120 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52760.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.27 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||
| Length | 461 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVIAQSLLWK EITLLKKIQH MVLSLTESGA RLFVTRFLEQ FISIGCVTIL EEGGTMFIFG EKDSTCPLKS ILKIHSPQFY WKVMTQADLG LADAYISGDF 101: SFVDKDSGLL NLIMILIANR DQRSPKSNLV KKRGWWTPVF LTAGLASVKY YLKHVLKQNT LTQARKNISS HYDLSNEFFG LFMDDTMMYS SAIFKSENED 201: PRTAQMRKIS LLIEKARIEK NHEVLEMGCG WGTFAIEVVK RTGCKYTGIT LSIEQLKYAK AKVKEAGLQG RITFMLCDYR QLSDARKYDR IIACEMIEAV 301: GHEFMDKFFS CCEDALAENG IFVLQFTAIP EALYDESRLT SGFITEYIFP GGCLPSLARV TSAMASSSRL CIENVENIGI HYYHTLRCWR KNFLERQKQI 401: IDLGFDDKFI RTWEYYFDYC AAGFKTLTLR SYQIVFSRPG NVAAFGDDDP FRSSTRKNNI I |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)