AT3G19780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.631 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF179 (InterPro:IPR003774), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF179) (TAIR:AT1G33780.1); Has 74 Blast hits to 72 proteins in 32 species: Archae - 0; Bacteria - 24; Metazoa - 11; Fungi - 3; Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6870238..6874677 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 119043.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.70 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||
| Length | 1059 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKTPTLLLLP FLVFVSIILP SSCHGEWEIL TEQNFSSQIR LHPHVLLFVT TPWCGESRSL KYEITQMVQR REEFGLLKLM VVYRNSEKVL AQAIGAAVNG 0101: ITILYYHNSV PYNYLGKLRA SNILSSIHPY LTSTPEELPL KHLKSPKSLK DFLQSSDKAL LLFEFCGWTT TLMSELKKNV TQDNLWQEWN NMCGLQSGFG 0201: KVPWLEDFSY ANDTAALQEH GRVNLGLGQT CNHEEFKRFS SFLLKLIATT KEFSLPPERQ KFGLITEESL ASSFNFGKSD SWAAVLQLAG CPHCSKIFKA 0301: GDDIQRFLKM ENPIVTELED DWQDHESSLP ASKPSVILFV DRSSGSLEEM RRSIKALDTF RQVAAQHKLS DIKKWENDIM YENPVSQTDQ ESGSVPLPKT 0401: VQKFKKIKFE NKVSFMIMDG GKHVALDTIA PGMEGSSLQE ILKNLLHRRK ESKLSSIAKD VGFRLLSDDV HIKVLDALPS QAEVVSGQDT TSSSAEGSSE 0501: ISLHPTEADV QNRVSMSSEA KDEMKSSEIE SSSPSDEEQA TTNRSEQLVV AETDKTEVYL KDNVNGEIKV SLHSEPKEDL VHKFTGSFFF SDANYVLLRA 0601: LTGDVKIPSA VIIDPALQQH YVLQDKFSYS SLVDFLDGYL NGSLSPYAQS ESSIQTPKRA AVPPFVNLDF HEVDSIPRVT VSTFSHMVHA WDQSSAEKAP 0701: CPLCQDVLVF FSNTWCGFCQ RMELVLHEVY RSLKEYKAII QGGSRNNQRS ELAETPTNGE NLKSPLIYLM DCTLNDCSLI LKSINQREVY PSLILFPAER 0801: NKVTPYEGES SVTDITEFLA RHANNSREFF RLLPTLSRNG RRNSNKVDQS SSSAVNNKVT DGDKLVEVVL RNREPAEREV NHDQVNSQSP PIHSLTNAPQ 0901: VKTGTVLVAT EKLAASLTFA KSKILIIKAG PEIGFLGLIF NKRIRWKSFP DLGETAELLK ETPLSFGGPV VDPGIPLLAL TRERDSSTNH DHPEISPGVY 1001: FLDHQSVARR IQELKSRELN PSEYWFFLGY SSWSYEQLFD EIGLGVWDVD NSDIDFAWP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)