AT1G76780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HSP20-like chaperones superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
HSP20-like chaperones superfamily protein; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G76770.1); Has 310212 Blast hits to 103002 proteins in 3336 species: Archae - 2366; Bacteria - 38795; Metazoa - 125626; Fungi - 30439; Plants - 14934; Viruses - 1639; Other Eukaryotes - 96413 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:28816641..28822256 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 216912.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.51 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.51 | ||||||||||||||||||||||||||||||||
| Length | 1871 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVMIRWMAWR KEVEFSVFKK VFRIPDTVDL DKIKARFDDD DATLTITMPK RVKGISGFKI EEEEEEEEEE EERVDVSEAE HKEETEKGEL KDDYLEKSHQ 0101: IDERIEEEKG LADSNKESVD SSLRKPPDIE GRECHEQTRH EEQENNKQLV QAESDDSDDF GSRAFEEIEE QESDVLDRTS TSGAMEKEMT DDVGDGLRKV 0201: QGIEEPERHN EESKISEMVD GETSGHEKKK VVKMDKKNRD VKEEVDGAMG EGFRPNIDRT QVVGDDEIAE TEKNDEEFES DKLEADEVDK INEGGNTKVR 0301: RHSEDRNLIK LQEKEEQHSK EQKGHSKEEN MKELVEEKTP EAETTIRNDI LGPGQEIEVP EVDTLGKTSD EGKEKQNIVK KEIKNGDATE EIDAKMGEVF 0401: ASNIADTGMN SEDFESDKLE SADEVDKMVE KKDRQEENDK VGAQSEDISL TKLQEIGEQQ FQGQKRHDKQ ENIKELREGQ ASEAEKNIKN DILKPVQKRS 0501: EGKHKIQKTF QEETNKQPEG YNEKIMETGK KINEDGTRKV QEMIRQQELD EPARSEKENR SRELVKSKTN DEEKKEKEIA GTERKEKESD RPKILREQEV 0601: ADEVAEDKTK FSIYGEVKEE EEIAGKEKEF GSDDDIARIV RDTEQLDSNA MKGQEEKDMI QELVLEEKVC DGGKGIIAVA ETKAENNKSK RVQETEEQKL 0701: DKEDTCGKHF QKLIEGEISD HGEVEDVEKG KKRTEAEKRI KDRAREAEEI KEKDLGVSGR YIKGTTIKEL VENRGIYRNE HEEKKKDDAN RPEKITGTIK 0801: QELVSLNSQL RQENVEDGDK TQELVEEKIK DCEEEEGSEE SKIKTDDVVR KVQGIKEEEL YKPKREHGTK ITELVEETTG DYEKQEEKET AESDIEAECG 0901: SLRKVDGIEE HELHEPKIHK ERDNNRVTGA KEPSGQEKGE KEEKIVESMT ITENDNSIDV QETKKERPGR LESHDKRYKI QELLMEAGHN DRKEEEQNEN 1001: VTAEVELETE RVSSKKVQEG KMEDDNSGKF HEFEERKSYE DWTHEKREKR KVLVEEEETY PKDKHTGGED HNDHKEEEQK ENVIAKAELN TEEDSFKKVE 1101: EIEKQDHGEL KRSMVQAKRQ ETEEKDKTRA MEKNETVERR KQTKDGSLGK LREGEDPELG GHERRGEEDR IEELVETEIS DHKEKVKKKD EDYILRSQDT 1201: GKVDLGERER RSKQRKIHKS VEDEIGDQED EDAEEAAAVV SRNENGSSRK VQTIEEESEK HKEQNKIPET SNPEVNEEDE ERVVEKETKE VEAHVQELEG 1301: KTENCKDDDG EGRREERGKQ GMTAENMLRQ RFKTKSDDGI VRKIQETKEE EPDEKKSQES SSHVVKLVAE DGSLRNGLEF SEKESTVSKM LKLDESKEKE 1401: EHKKIRKPTE ERSNAPVIEK QGNKKNAEEE MQDKIDRRGK NQEIKGQEPY GVLRNGEHDK ITEYHRGEEK GTAENVSSTK IQQTKDELEK PRKPSEISEN 1501: HNIHEFMDSS QSQDIEEKGS DQAEKYAKQN KIQEVMNDED KKEEYHISER VRNEMAKRIL QVESKANDGS SKKNETEGQE STGLRGRKKR ENHQELVELE 1601: TSDQKKGVKE DEVVGKAEII EDEYDSSRKI HEHEERMSDK LEMHGEEEMS EKLAEEETSD GEEAKEGNRA GKKSRDDGFG KVRKIEVQRK DNDQSFVEKD 1701: TSGKAKENLN DEEPTKTETK ATDNESRKIH QIKEQGTSEQ ERLKEQGRIK ELVEDRTHFC REKENRETEY EDGSSKMIQE IDKEESIEPV DRETSEDDEE 1801: ELEIEFEDEE EDWEAEVIQE TDSDSDNDKI RQIKRIRLGF RLVGGSTLFM SLIVIVISII RSKRNIRCYK F |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)