AT3G18900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.971 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G66600.3); Has 1466 Blast hits to 1426 proteins in 93 species: Archae - 0; Bacteria - 91; Metazoa - 23; Fungi - 0; Plants - 1310; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6517181..6519677 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 59881.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.15 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||
| Length | 524 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTTRTSNHKR SRSDPVPRKS LKNKKSSEAL YNIHMDELLQ REIEQLKSLL KSRKLHPGGR RVSSDEIDLL LQEDEVLVRR EMKTVLGRKL FLEDSKNEDS 101: SIPKEAKKLV EEIAGLELQV MYLETYLLLL YRRFFNNKIT SKLESEEKER SEDLLECTKL IDSPKKGVCS PQKLVEDSGI FRSHSSLSHC SGYSFRMSPH 201: AMDSSYHRSL PFSMLEQSDI DELIGTYVSE NVHKSPNSLS EEMVKCISEL CRQLVDPGSL DNDLESSSPF RGKEPLKIIS RPYDKLLMVK SISRDSEKLN 301: AVEPALKHFR SLVNKLEGVN PRKLNHEEKL AFWINIHNSL VMHSILVYGN PKNSMKRVSG LLKAAYNVGG RSLNLDTIQT SILGCRVFRF LFASRSKGRA 401: GDLGRDYAIT HRESLLHFAL CSGSLSDPSV RIYTPKNVMM ELECGREEYV RSNLGISKDN KILLPKLVEI YAKDTELCNV GVLDMIGKCL PCEARDRIQK 501: CRNKKHGRFS IDWIAHDFRF GLLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)