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AT3G16090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G65040.2); Has 7341 Blast hits to 7321 proteins in 267 species: Archae - 0; Bacteria - 4; Metazoa - 2254; Fungi - 727; Plants - 3286; Viruses - 21; Other Eukaryotes - 1049 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:COG5243eggNOG:KOG0802EMBL:AB012247
EMBL:AK117158EMBL:CP002686EMBL:DQ059113EnsemblPlants:AT3G16090
EnsemblPlants:AT3G16090.1entrez:820854Gene3D:3.30.40.10GeneID:820854
Genevisible:Q9LW77GO:GO:0000209GO:GO:0000836GO:GO:0008270
GO:GO:0016021GO:GO:0016874GO:GO:0030433GO:GO:0030968
GO:GO:0036513GO:GO:0042787GO:GO:0044322GO:GO:0051082
GO:GO:1904264GO:GO:1990381Gramene:AT3G16090.1hmmpanther:PTHR22763
hmmpanther:PTHR22763:SF25HOGENOM:HOG000294196InParanoid:Q9LW77InterPro:IPR001841
InterPro:IPR013083InterPro:IPR032832KEGG:ath:AT3G16090KO:K10601
ncoils:CoilOMA:KGHATADPANTHER:PTHR22763:SF25PaxDb:Q9LW77
Pfam:PF13639Pfam:Q9LW77Pfscan:PS50089PhylomeDB:Q9LW77
PRIDE:Q9LW77PRO:PR:Q9LW77PROSITE:PS50089ProteinModelPortal:Q9LW77
Proteomes:UP000006548Reactome:R-ATH-5358346Reactome:R-ATH-901032RefSeq:NP_188230.1
SMART:SM00184SMR:Q9LW77STRING:3702.AT3G16090.1SUPFAM:SSF57850
TAIR:AT3G16090TMHMM:TMhelixUniGene:At.38946UniGene:At.75414
UniPathway:UPA00143UniProt:Q9LW77
Coordinates (TAIR10) chr3:+:5456513..5458694
Molecular Weight (calculated) 56039.80 Da
IEP (calculated) 7.85
GRAVY (calculated) 0.01
Length 492 amino acids
Sequence (TAIR10)
(BLAST)
001: MIRLRTYAGL SFMATLAVIY HAFSSRGQFY PATVYLSTSK ISLVLLLNMC LVLMLSLWHL VKFVFLGSLR EAEVERLNEQ AWRELMEILF AITIFRQDFS
101: SGFLPLVVTL LLIKALHWLA QKRVEYIETT PSVSKLSHFR IVSFMGFLLL VDSLFMYSSI RHLIQSRQAS VSLFFSFEYM ILATTTVAIF VKYVFYVTDM
201: LMDGQWEKKP VYTFYLELIR DLLHLSMYIC FFFVIFMNYG VPLHLLRELY ETFRNFQIRV SDYLRYRKIT SNMNDRFPDA TPEELTASDA TCIICREEMT
301: NAKKLICGHL FHVHCLRSWL ERQQTCPTCR ALVVPPENAT SAAPGQRELH QGSQQGTSSS GNQGSEISSS AGVSNNSLSR HHARLQAAAS AASVYGKSMV
401: YPSANTVAWS SGVPGTEQVS TEPDQTLPQH NLPVENSHAY ANMSETKLEE MRKSLETHLE ILRNRLHFLE TRKPESAGEP ENKGKSVADA AE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)