AT3G13800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.980 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Metallo-hydrolase/oxidoreductase superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Metallo-hydrolase/oxidoreductase superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: Metallo-hydrolase/oxidoreductase superfamily protein (TAIR:AT1G30300.1); Has 2828 Blast hits to 2806 proteins in 769 species: Archae - 68; Bacteria - 1382; Metazoa - 7; Fungi - 23; Plants - 100; Viruses - 0; Other Eukaryotes - 1248 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:4538879..4541366 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40385.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.58 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||
| Length | 361 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAMSAVLSL GLGTLRPSHR SLSCFDSLRH HQTSFLRCHQ SLISRNTTRS PLNKILQACL QSNSANGDAL VSSSDESSEI VFMGTGTSEG IPRVSCLTNP 101: LKTCSVCTKA TEPGNRNRRL NTSILVRYIR PSGTSNILID CGKFFYHSAL RWFPTFGLRT LDAVVITHSH ADAIGGLDDL RDWTNNVQPH IPIYTAIRDL 201: EVMKKTHYYL VDTSVIIPGA AVSELEFKVI HEDQPFVVND LKITPLPVWH GSNYRSLGFR FGNVCYISDV SDIPEETYPL LKDCDLLIMD ALRPDRSSAT 301: HFGLPRALEE VRKIKPKRTL FTGMMHLMDH EKVSEELEKL RNTEGLDVQL SYDGLRVPIS I |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)