AT3G11030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.430 golgi 0.309 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRICHOME BIREFRINGENCE-LIKE 32 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TRICHOME BIREFRINGENCE-LIKE 32 (TBL32); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 33 (TAIR:AT2G40320.1); Has 40045 Blast hits to 14436 proteins in 846 species: Archae - 57; Bacteria - 5065; Metazoa - 12608; Fungi - 2698; Plants - 11562; Viruses - 2042; Other Eukaryotes - 6013 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:3457300..3459300 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51710.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.24 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 451 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTTALFSPSN RRKRRLTHFF FTVLAFILLA AFIYGHDFIS FSRRSLHSPT IVHQSAIVVV VDEPPPPPPT SPPPPSPPPP SPPPPSPPPP SPPPPAFAVG 101: KTPEGCDVFK GNWVKDWSTR PLYRESECPY IQPQLTCRTH GRPDSDYQSW RWRPDSCSLP SFNATVMLES LRGKKMMFVG DSLNRGMYVS LICLLHSQIP 201: ENSKSMDTFG SLTVFSLKDY NATIEFYWAP FLLESNSDNA TVHRVSDRIV RKGSINKHGR HWRGADIVVF NTYLWWRTGF KMKILEGSFK DEKKRIVEME 301: SEDAYRMALK TMVKWVKKNM DPLKTRVFFA TMSPTHYKGE DWGGEQGKNC YNQTTPIQDM NHWPSDCSKT LMKVIGEELD QRAEFPVTVL NITQLSGYRK 401: DAHTSIYKKQ WSPLTKEQLA NPASYSDCIH WCLPGLQDTW NELFFAKLFY P |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)