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AT3G09800.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.910
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SNARE-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SNARE-like superfamily protein; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: clathrin vesicle coat; CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT4G08520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:5472DNASU:820138eggNOG:COG5541eggNOG:KOG3343
EMBL:AC015985EMBL:AC016661EMBL:BT002902EMBL:BT015167
EMBL:CP002686EnsemblPlants:AT3G09800EnsemblPlants:AT3G09800.1entrez:820138
GeneID:820138Genevisible:Q84LG4GO:GO:0015031GO:GO:0016192
GO:GO:0030663Gramene:AT3G09800.1hmmpanther:PTHR11043hmmpanther:PTHR11043:SF8
HOGENOM:HOG000214428InParanoid:Q84LG4InterPro:IPR011012InterPro:IPR022775
KEGG:ath:AT3G09800PaxDb:Q84LG4Pfam:PF01217Pfam:Q84LG4
PhylomeDB:Q84LG4PRIDE:Q84LG4PRO:PR:Q84LG4ProteinModelPortal:Q84LG4
Proteomes:UP000006548Reactome:R-ATH-199997Reactome:R-ATH-6807878RefSeq:NP_566358.3
SMR:Q84LG4STRING:3702.AT3G09800.1SUPFAM:SSF64356TAIR:AT3G09800
UniGene:At.40039UniProt:Q84LG4
Coordinates (TAIR10) chr3:-:3006731..3007916
Molecular Weight (calculated) 19753.60 Da
IEP (calculated) 4.38
GRAVY (calculated) 0.04
Length 179 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPDSCPLVK KILLLDSEGK RVAVKYYSDD WPTNAAKLSF EKYVFSKTSK TNARTEAEIT LLDSNIIVYK FAQDLHFFVT GGENENELIL ASVLQGFFDA
101: VALLLRSNVE KMEALENLDL IFLCLDEMVD QGVVLETDPN VIAGKVAMQS TEASGSLSEQ TLTQALATAR EHLARSLLT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)