AT1G33350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1); Has 34946 Blast hits to 13536 proteins in 257 species: Archae - 4; Bacteria - 29; Metazoa - 79; Fungi - 56; Plants - 34238; Viruses - 0; Other Eukaryotes - 540 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:12090071..12091687 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60477.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.10 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.04 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 538 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGTRVTQFSY LHAPSSHMAE QLLNQFISAV ISKSRHLNHL KQVQSFMIVS GLSHSHFLCF KLLRFCTLRL CNLSYARFIF DRFSFPNTHL YAAVLTAYSS 101: SLPLHASSAF SFFRLMVNRS VPRPNHFIYP LVLKSTPYLS SAFSTPLVHT HLFKSGFHLY VVVQTALLHS YASSVSHITL ARQLFDEMSE RNVVSWTAML 201: SGYARSGDIS NAVALFEDMP ERDVPSWNAI LAACTQNGLF LEAVSLFRRM INEPSIRPNE VTVVCVLSAC AQTGTLQLAK GIHAFAYRRD LSSDVFVSNS 301: LVDLYGKCGN LEEASSVFKM ASKKSLTAWN SMINCFALHG RSEEAIAVFE EMMKLNINDI KPDHITFIGL LNACTHGGLV SKGRGYFDLM TNRFGIEPRI 401: EHYGCLIDLL GRAGRFDEAL EVMSTMKMKA DEAIWGSLLN ACKIHGHLDL AEVAVKNLVA LNPNNGGYVA MMANLYGEMG NWEEARRARK MIKHQNAYKP 501: PGWSRIEIDN EVHQFYSLDK SHPETEEIYM ILDSLISF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)