AT3G07195.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RPM1-interacting protein 4 (RIN4) family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RPM1-interacting protein 4 (RIN4) family protein; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: defense protein-related (TAIR:AT5G48657.2); Has 4930 Blast hits to 4046 proteins in 465 species: Archae - 6; Bacteria - 1879; Metazoa - 1598; Fungi - 263; Plants - 594; Viruses - 25; Other Eukaryotes - 565 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2288959..2290309 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 24014.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 10.52 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.19 | ||||||||||||||||||||||||
| Length | 225 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANRPHVPKF GDWNNQDQPF TVVFDNARTN KRQDLYESIE KPETKPQELA PPPPQPARRI QKPEAPKPVK QDTPRAPPPT EKNRVKAPPA DQLYGGGGSG 101: GGGRSGSGSA GGLYGGYGGG SVGNQRQPPA PRPTQPRQNL RGGNNGRGGT TIPPFPGSVG AGGDMSYTQI FEKVKEERNE GVIRPNGGTA GNTPSRPINS 201: QHDQSTNQTS SKGCCFSWCR RGSKY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)