AT1G07620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GTP-binding protein Obg/CgtA | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ATOBGM; FUNCTIONS IN: magnesium ion binding, GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GTP-binding protein Obg/CgtA (InterPro:IPR014100); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT5G02390.1); Has 561 Blast hits to 511 proteins in 87 species: Archae - 0; Bacteria - 20; Metazoa - 47; Fungi - 31; Plants - 219; Viruses - 2; Other Eukaryotes - 242 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:2344556..2346374 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63908.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.53 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.92 | ||||||||||||||||||||||||||||||||
| Length | 552 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKHLKNESS SPNHGKYNHK LGWLAGMLHV LDFHHWRTKN RPICWKTPRT HSLMRETEEQ EPFLDSKIND SKMLSVVADN KPTRPETKLK KTMTTKQVTE 101: YVDFLEILRK EDVFVKIMKD QVQIKSNPRV LPKSGSFPIS GSSRPARIQH KQKENWYAPK QNGAVLTLKV PRDTSQECKP ISPSHGSADD DHGFNHAIIN 201: GFREIKKLLK NTLKDRNRTK KKKKKKVLDV AKDDYVGRYS QLLKQISRRE GGDLRSKSLK LSYEEKKSDS RDNKPQFFRR ISSLSSLEVL GSFLTDLPRD 301: SSTSNQETRI SEDQDTNFGA KKSVLSSESP VRAEKEEKYE VQEERSQENH LDSSNQRILQ QEPDSVPSTN KTAEKTETLL PQGLGLSSLE IYKHEEEDED 401: AYFCYVKKVL KVSGFLENKD NEEKWYSEEQ PLNPSLLYEL DIQEEETVND KELLFDLVNE AIVETQNHSQ IYFPKTFPYG KRYLDEVWGR VEWSLSGLGA 501: ENRDRSLDDI VGRDLLTKSD GWMNLQGESE WLTLELEDLI FDDVLDELLC VY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)