AT3G07180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GPI transamidase component PIG-S-related | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
GPI transamidase component PIG-S-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-glycan biosynthesis class S protein (InterPro:IPR019540); Has 305 Blast hits to 301 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 122; Plants - 46; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:2282455..2285475 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67132.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.93 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||
| Length | 599 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEISDRLNP GITPEFDPKT MRSTKPGLKR LFITSSVLFS FLLGVPFLWK SVEIYRSPLP FHDIDSLSDQ LESTPLRFPC NFHAVFVGFR STDPDNLRSQ 101: IQDGINQLTH QSSQCGSCDF SLSVTVQNRE DQCSDTLAHS STTCSYRCGV IKRNGFSVGL DDTVDESLND VFSGCSENSG KMYSVVVVNK ENANGGDEVK 201: AVVGKRRHAW IVGNGLEERY GDIVARVSEI FVQVFMNGGR EEDSIQGEFM PVGSDGKIVL SFSLLNSNPR DWVYDWDFQR IDEALLAPVT KALAPIANIT 301: VESQVLYHTP KSSFSSWDKK LQSYIFRTSD LPFFVNSNEW HLDTSAGASG RSKILQFVVY IPSGKECPLL LQLPNVEISK TNGFISPMWG GVIVWNPGNC 401: DKDSESPSRN TISLQDLEQI VEIFLGQFRQ LFGFKSEAKY TTGLGTYKIL TSERGFTEWE LDVLSRKHTC FNLHSCSTTL GSLSRLVRSL PRMIIKDEIG 501: EQVKYSLKAA KLAQSNASLG GYSSSASSSR EARSLAENAF FHPSIMSVSY FSYEHCFAVY SPFFLPVVGH VVLAAVREWK RYKQEKAKYL TWLTRKKTT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)