AT2G39230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : LATERAL ORGAN JUNCTION | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a pentatricopeptide protein (LOJ) that is specifically expressed in lateral organ junctions. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
LATERAL ORGAN JUNCTION (LOJ); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G54980.1); Has 63662 Blast hits to 14403 proteins in 306 species: Archae - 7; Bacteria - 57; Metazoa - 980; Fungi - 1296; Plants - 59204; Viruses - 0; Other Eukaryotes - 2118 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:16381647..16384250 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 97674.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.43 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 867 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTTFMVSKRF RPPIFLHRFI NPKPISSQTR FLHPPDNQSR DISDSTTETI STLEFPHKTS VPNHSPLTST SETENHVDDA RVIEVLLGRR NDPVSALQYC 101: NWVKPLHRLC EGGDVFWVLI HILLSSIHTH DRASNLLVMF VSNNPTLIPN VMVNNLVDSS KRFGFELTPR AFNYLLNAYI RNKRMDYAVD CFGLMVDRKV 201: VPFVPYVNNV LSSLVRSNLI DEAKEIYNKM VLIGVAGDNV TTQLLMRASL RERKPEEAVK IFRRVMSRGA EPDGLLFSLA VQAACKTPDL VMALDLLREM 301: RGKLGVPASQ ETYTSVIVAF VKEGNMEEAV RVMDEMVGFG IPMSVIAATS LVNGYCKGNE LGKALDLFNR MEEEGLAPDK VMFSVMVEWF CKNMEMEKAI 401: EFYMRMKSVR IAPSSVLVHT MIQGCLKAES PEAALEIFND SFESWIAHGF MCNKIFLLFC KQGKVDAATS FLKMMEQKGI EPNVVFYNNM MLAHCRMKNM 501: DLARSIFSEM LEKGLEPNNF TYSILIDGFF KNKDEQNAWD VINQMNASNF EANEVIYNTI INGLCKVGQT SKAKEMLQNL IKEKRYSMSC TSYNSIIDGF 601: VKVGDTDSAV ETYREMSENG KSPNVVTFTS LINGFCKSNR MDLALEMTHE MKSMELKLDL PAYGALIDGF CKKNDMKTAY TLFSELPELG LMPNVSVYNS 701: LISGFRNLGK MDAAIDLYKK MVNDGISCDL FTYTTMIDGL LKDGNINLAS DLYSELLDLG IVPDEILHMV LVNGLSKKGQ FLKASKMLEE MKKKDVTPNV 801: LLYSTVIAGH HREGNLNEAF RLHDEMLEKG IVHDDTVFNL LVSGRVEKPP AASKISSLAS PEMRSSY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)