AT2G15980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.886 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G39710.1); Has 28218 Blast hits to 10356 proteins in 245 species: Archae - 1; Bacteria - 15; Metazoa - 229; Fungi - 251; Plants - 27094; Viruses - 0; Other Eukaryotes - 628 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:6951349..6952845 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56125.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.89 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||
| Length | 498 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSTSILRRIL DPTRKPKPDA ILSISLLTTV SSPPSPPSDP LISDAVSILT HHRSKSRWST LRSLQPSGFT PSQFSEITLC LRNNPHLSLR FFLFTRRYSL 101: CSHDTHSCST LIHILSRSRL KSHASEIIRL ALRLAATDED EDRVLKVFRS LIKSYNRCGS APFVFDLLIK SCLDSKEIDG AVMVMRKLRS RGINAQISTC 201: NALITEVSRR RGASNGYKMY REVFGLDDVS VDEAKKMIGK IKPNATTFNS MMVSFYREGE TEMVERIWRE MEEEVGCSPN VYSYNVLMEA YCARGLMSEA 301: EKVWEEMKVR GVVYDIVAYN TMIGGLCSNF EVVKAKELFR DMGLKGIECT CLTYEHLVNG YCKAGDVDSG LVVYREMKRK GFEADGLTIE ALVEGLCDDR 401: DGQRVVEAAD IVKDAVREAM FYPSRNCYEL LVKRLCEDGK MDRALNIQAE MVGKGFKPSQ ETYRAFIDGY GIVGDEETSA LLAIEMAESL KLRAEEES |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)