AT2G15220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant basic secretory protein (BSP) family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant basic secretory protein (BSP) family protein; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family, basic secretory protein (InterPro:IPR007541); BEST Arabidopsis thaliana protein match is: Plant basic secretory protein (BSP) family protein (TAIR:AT2G15130.1); Has 296 Blast hits to 296 proteins in 84 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi - 66; Plants - 170; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:6608689..6609366 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 25165.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.83 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||
| Length | 225 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTFHKIFFVI SLMLVVSLVN AVDYSVVDNS GDSTGGRRFR GEIGGISYGT QTLRSATDFV WRLFQQTNPS DRKSVTKITL FMENGDGVAY NSANEIHFNV 101: GYLAGVSGDV KREFTGVVYH EVVHSWQWNG AGRAPGGLIE GIADYVRLKA GYAPSHWVGP GRGDRWDQGY DVTARFLDYC NGLRNGFVAE LNKKMRNGYS 201: DGFFVDLLGK DVNQLWREYK AKYGQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)