AT1G80360.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.805 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity; INVOLVED IN: asparagine catabolic process, biosynthetic process, glutamate catabolic process to oxaloacetate, aspartate transamidation; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aspartate aminotransferase (TAIR:AT2G22250.1); Has 39039 Blast hits to 39038 proteins in 3030 species: Archae - 1022; Bacteria - 27880; Metazoa - 604; Fungi - 771; Plants - 1310; Viruses - 0; Other Eukaryotes - 7452 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:30208736..30210643 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43764.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.32 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 394 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSFGMLSRR TLGTDMPVMA QIRSLMAELT NPMSLAQGVV HWQPPQKALE KVKELVWDPI ISSYGPDEGL PELRQALLKK LREENKLTNS QVMVTAGANQ 101: AFVNLVITLC DAGDSVVMFE PYYFNSYMAF QMTGVTNIIV GPGQSDTLYP DADWLERTLS ESKPTPKVVT VVNPGNPSGT YVPEPLLKRI AQICKDAGCW 201: LIVDNTYEYF MYDGLKHCCV EGDHIVNVFS FSKTYGMMGW RLGYIAYSER LDGFATELVK IQDNIPICAA IISQRLAVYA LEEGSGWITE RVKSLVKNRD 301: IVKEALEPLG KENVKGGEGA IYLWAKLPEG HRDDFKVVRW LAHRHGVVVI PGCASGSPGY LRVSFGGLQE VEMRAAAARL RKGIEELLHH GMVE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)